嫦娥醫學肽度酒研究報告人陳希博士
陳希,男,博士,高級工程師,畢業於武漢大學生命科學學院,在校期間搭建了武漢大學第一個生物質譜平臺,從事蛋白質組學研究工作。畢業後前往香港大學任職高級研究助理,繼續從事生物質譜方向研究。2013年,前往武漢生物技術研
究院,創建了生物質譜平臺,負責平臺的技術及管理運營,同時作為武漢生物技術研究院建院以來的第一個博士後,進行深造。2015年底,陳希博士榮獲由湖北省人力資源和社會保障廳頒發的「湖北省企業研發人才」稱號。2017年底,陳希博士依託武漢生物技術研究院創辦了譜度眾合(武漢)生命科技有限公司,擔任公司總經理,從事:(1)蛋白質組學科技服務、(2)醫學檢測試劑盒研發。陳希博士在生物質譜及蛋白質組學領域擁有14年的科研和市場經驗,發表SCI論文30餘篇,申請國家發明專利9項,實用新型專利2項,軟體著作權10項,並主持:(1)國家自然科學基金青年基金、(2)湖北省博士後創新崗位基金、(3)武漢市博士後科研啟動基金。
教育背景
2004---2010 博士學位 武漢大學生命科學學院 生物化學與分子生物學系
2000---2004 學士學位 武漢大學生命科學學院 生物技術系
工作經歷
2018---至今 總經理 譜度眾合(武漢)生命科技有限公司
2013---2017 生物質譜平臺主管 武漢生物技術研究院
2011---2013 高級研究助理 香港大學生物科學學院
主持項目
1. 國家自然科學基金青年科學基金;項目名稱:錯配修復介導的細胞凋亡相關蛋白的鑑定篩選及功;項目金額:24萬元;主持人:陳希
2. 湖北省博士後創新崗位基金;項目名稱:基於質譜技術的臨床樣本胺基酸快速檢驗;項目金額:10萬元;主持人:陳希
3. 武漢市博士後科研啟動基金;項目名稱:臨床樣本胺基酸質譜檢測試劑盒研發;項目金額:10萬元;主持人:陳希
智慧財產權
1. 一種蛋白質凝膠樣品的質譜檢測前處理方法及處理試劑盒(發明專利;申請號:202010578728.8)
2. 一種磷酸化肽段富集裝置及其富集方法(發明專利;申請號:201911265126.0)
3. 一種TNC蛋白檢測試劑的應用及試劑盒(發明專利;申請號:202010749270.8)
4. 一種異構數據不依賴型蛋白質組學質譜分析系統及方法(發明專利;申請號:202011005330.1)
5. 一種改進的生物樣本中磷酸化肽段的鑑定及定量方法(發明專利;申請號:201810287396.0)
6. 一種臨床樣本中游離胺基酸的定量檢測方法(發明專利;申請號:201610786095.3)
7. 一種快速從微量血液中富集純化維生素D的方法(發明專利;申請號:201911343590.7)
8. 一種血液或尿液中13種微量元素的質譜快速定量方法(發明專利;申請號:201911343932.5)
9. 一種磷酸化多肽富集的輔助裝置(實用新型專利;授權:201821917095.3)
10. 一種用於肽段標記除鹽的裝置(實用新型專利;授權:201821684442.2)
11. 基於Uniprot和InterPro資料庫的GO注釋信息及映射關係整合軟體V1.0(軟體著作權;登記號:2018SR1005721)
12. GO層級資料庫軟體(軟體著作權;登記號:2018SR1090409)
13. 基於ProteinPilot定量蛋白質組學數據處理軟體V1.0(軟體著作權;登記號:2018SR1090190)
14. 基於ProteinPilot定量磷酸化蛋白質組學數據處理軟體V1.0(軟體著作權;登記號:2018SR1090186)
15. 蛋白數據的GO和KEGG注釋結果分析軟體V1.0(軟體著作權;登記號:2018SR979518)
16. 基於eggNOG5.0的COG注釋結果富集軟體V1.0(軟體著作權;登記號:2020SR0257107)
17. 基於eggNOG4.5注釋結果的COG注釋結果整理軟體V1.0(軟體著作權;登記號:2020SR0256255)
18. 基於MaxQuant處理的LFQ差異蛋白多標準判定軟體V1.0(軟體著作權;登記號:2020SR0257103)
19. 基於ProteinPilot蛋白鑑定數據處理軟體V1.0(軟體著作權;登記號:2020SR0610586)
20. 基於MaxQuant蛋白鑑定數據處理軟體V1.0(軟體著作權;登記號:2020SR0713124)
發表論文
1. Chen X, Wu D, Zhao Y, Wong HB, Guo L: Increasing phosphoproteome coverage and identification of phosphorylation motifs through combination of different HPLC fractionation methods. J Chromatogr B 2011 Jan 1;879(1):25-34.
2. Chen X, Zhao Y, Li GM, Guo L: Proteomic analysis of mismatch repair-mediated alkylating agent-induced DNA damage response. Cell & Bioscience 2013 Sep 19;3(1):37.
3. Chen X, Chan WL, Zhu FY, Chu H, Chu IK, Lo C: Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii. Proteome Science 2014 Mar 17;12:16.
4. Zhu SL&, Chen X&, Wang LJ, Wan WW, Xin QL, Wang W, Xiao G, Zhang LK: Global quantitative proteomic analysis profiles host protein expression in response to Sendai virus infection. Proteomics 2017 Jan 9.
5. He XM, Chen X, Yuan BF, Feng YQ: Graft modification of cotton with phosphate group and its application to the enrichment of phosphopeptides. J Chromatogr A 2017 Feb 10;1484:49-57.
6. Hou D, Chen X, Zhang LK: Proteomic Analysis of Mamestra Brassicae Nucleopolyhedrovirus Progeny Virions from Two Different Hosts. PLoS One 2016 Apr 8; 11(4):e0153365.
7. Zhu GT, Chen X, He XM, Zhang Z, Li XS, Yuan BF, Feng YQ: Bioinspired preparation of monolithic ordered mesoporous silica for enrichment of endogenous peptides. RSC Advances 2015 Sep 1.
8. He XM, Chen X, Zhu GT, Wang Q, Yuan BF, Feng YQ: Hydrophilic Carboxyl Cotton Chelator for Titanium(IV) Immobilization and Its Application as Novel Fibrous Sorbent for Rapid Enrichment of Phosphopeptides. ACS Appl Mater Interfaces 2015 Aug 12;7(31):17356-62.
9. Zhu GT, Chen X, He XM, Wang H, Zhang Z, Feng YQ: Electrospun Highly Ordered Mesoporous Silica–Carbon Composite Nanofibers for Rapid Extraction and Prefractionation of Endogenous Peptides. Chem Eur J 2015 Jan 30.
10. Li XS, Chen X, Sun H, Yuan BF, Feng YQ: Perovskite for the highly selective enrichment of phosphopeptides. J Chromatogr A 2015 Jan 9.
11. Li XS, Chen X, Yuan BF, Feng YQ: Phosphonate-modified metal oxides for the highly selective enrichment of phosphopeptides. RSC Adv 2015, 5, 7832-7841.
12. Kang X, Chen X, He Y, Guo D, Guo L, Zhong J, Shu HB: DDB1 is a cellular substrate of NS3/4A protease and required for hepatitis C virus replication. Virology 2013 Jan 20;435(2):385-94.
13. Wang D, Gan G, Chen X, Zhong CQ: QuantPipe: A User-Friendly Pipeline Software Tool for DIA Data Analysis Based on the OpenSWATH-PyProphet-TRIC Workflow. J Proteome Res 2020 Oct 22.
14. Shu T, Ning W, Wu D, Xu J, Han Q, Huang M, Zou X, Yang Q, Yuan Y, Bie Y, Pan S, Mu J, Han Y, Yang X, Zhou H, Li R, Ren Y, Chen X, Yao S, Qiu Y, Zhang DY, Xue Y, Shang Y, Zhou X: Plasma Proteomics Identify Biomarkers and Pathogenesis of COVID-19. Immunity 2020 Oct 20;S1074-7613(20)30449-0.
15. Zhu FY, Song YC, Zhang KL, Chen X, Chen MX: Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry. Trends in Plant Science 2020 September 2.
16. Chen MX, Lu CC, Sun PC, Nie YX, Tian Y, Hu QJ, Debatosh D, Hou XX, Gao B, Chen X, Liu SX, Zheng CC, Zhao XY, Dai L, Zhang J, Liu YG: Comprehensive transcriptome and proteome analyses reveal a novel sodium chloride responsive gene network in maize seed tissues during germination. Plant, Cell & Environment 2020 Jul 17.
17. Zhong CQ, Wu J, Qiu X, Chen X, Xie C, Han J: Generation of a murine SWATH-MS spectral library to quantify 11,000+ proteins. Sci Data 2020 Mar 26;7(1):104.
18. Chen MX, Zhu FY, Gao B, Ma KL, Zhang YJ, Fernie A, Chen X, Ye NH, Hu QJ, Tian Y, Zhang D, Liu TY, Zhang JH, Liu YG: Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation. Plant Physiology 2020 March.
19. Zhong CQ, Wu R, Chen X, Wu S, Shuai J, Han J: Systematic assessment of the effect of internal library in targeted analysis of SWATH-MS. J Proteome Res 2020 Jan 3;19(1):477-492.
20. Wan W, Wang L, Chen X, Zhu S, Shang W, Xiao G, Zhang LK: A Subcellular Quantitative Proteomic Analysis of Herpes Simplex Virus Type 1-Infected HEK 293T Cells. Molecules 2019 Nov 20;24(23).
21. Chen MX, Sun C, Zhang KL, Song YC, Tian Y, Chen X, Liu YG, Ye NH, Zhang J, Qu S, Zhu FY: SWATH-MS-facilitated proteomic profiling of fruit skin between Fuji apple and a red skin bud sport mutant. BMC Plant Biol 2019 Oct 24;19(1):445.
22. Chen MX, Zhu FY, Wang FZ, Ye NH, Gao B, Chen X, Zhao SS, Fan T, Cao YY, Liu TY, Su ZZ, Xie LJ, Hu QJ, Wu HJ, Xiao S, Zhang J, Liu YG: Alternative splicing and translation play important roles in hypoxic germination in rice. J Exp Bot 2019 Feb 5;70(3):817-833.
23. Xiong T, Ye XD, Su YT, Chen X, Sun H, Li B, Chen YJ: Identification and Quantification of Proteins at Adsorption Layer of Emulsion Stabilized by Pea Protein Isolates. Colloids and Surfaces B: Biointerfaces 2018 May 30.
24. He XM, Liang XC, Chen X, Yuan BF, Zhou P, Zhang LN, Feng YQ: High Strength and Hydrophilic Chitosan Microspheres for the Selective Enrichment of N-Glycopeptides. Analytical Chemistry 2017 Sep 19;89(18):9712-9721.
25. Liu Y, Tan Z, Shu B, Zhang Y, Zheng C, Ke X, Chen X, Wang H, Zheng Z: An improved method for identifying SUMOylation sites of viral proteins. Virol Sin 2017 Dec;32(6):537-540.
26. Xin QL, Deng CL, Chen X, Wang J, Wang SB, Wang W, Deng F, Zhang B, Xiao G, Zhang LK: Quantitative Proteomic Analysis of Mosquito C6/36 Cells Reveals Host Proteins Involved in Zika Virus Infection. J Virol 2017 May 26;91(12).
27. Xiang T, Yang G, Liu X, Zhou Y, Fu Z, Lu F, Gu J, Taniguchi N, Tan Z, Chen X, Xie Y, Guan F, Zhang XL: Alteration of N-glycan expression profile and glycan pattern of glycoproteins in human hepatoma cells after HCV infection. Biochim Biophys Acta 2017 Feb 13.
28. He DL, Damaris RN, Fu JL, Tu JX, Fu TD, Chen X, Yi B, Yang PF: Differential molecular responses of rapeseed cotyledons to light and dark reveal metabolic adaptations towards autotrophy establishment. Front Plant Sci 2016;7:988.
29. Jin Y, Wang J, Ye X, Su Y, Yu G, Yang Q, Liu W, Yu W, Cai J, Chen X, Liang Y, Chen Y, Wong BH, Fu X, Sun H: Identification of GlcNAcylated alpha-1-antichymotrypsin as an early biomarker in human non-small-cell lung cancer by quantitative proteomic analysis with two lectins. Br J Cancer 2016 Mar 1;114(5):532-44.
30. Wang Z, Han QQ, Zhou MT, Chen X, Guo L: Protein turnover analysis in Salmonella Typhimurium during infection by dynamic SILAC, Topograph, and quantitative proteomics. J Basic Microbiol 2016 Jan 15.
31. Zhou MT, Qin Y, Li M, Chen C, Chen X, Shu HB, Guo L: Quantitative Proteomics Reveals the Roles of Peroxisome-associated Proteins in Antiviral Innate Immune Responses. Mol Cell Proteomics 2015 Sep;14(9):2535-49.
32. Li HY, Zhang LK, Zhu XJ, Shang J, Chen X, Zhu Y, Guo L: Analysis of EV71 infection progression using triple-SILAC-based proteomics approach. Proteomics 2015 Aug 26.
33. He XM, Zhu GT, Zhu YY, Chen X, Zhang Z, Wang ST, Yuan BF, Feng YQ: Facile Preparation of Biocompatible Sulfhydryl Cotton Fiber-Based Sorbents by "Thiol-ene" Click Chemistry for Biological Analysis. ACS Appl Mater Interfaces 2014 Oct 10.
34. Wu X, Tian L, Li J, Zhang Y, Han V, Li Y, Xu X, Li H, Chen X, Chen J, Jin W, Xie Y, Han J, Zhong CQ: Investigation of receptor interacting protein (RIP3)-dependent protein phosphorylation by quantitative phosphoproteomics. Mol Cell Proteomics 2012 Dec;11(12):1640-51.
35. Deng M, Li F, Ballif BA, Li S, Chen X, Guo L, Ye X: Identification and functional analysis of a novel cyclin e/cdk2 substrate ankrd17. J Biol Chem 2009, 284:7875-7888.
36. Zhou Z, Fan JB, Zhu HL, Shewmaker F, Yan X, Chen X, Chen J, Xiao GF, Guo L, Liang Y: Crowded cell-like environment accelerates the nucleation step of amyloidogenic protein misfolding. J Biol Chem 2009, 284:30148-30158.