在閱讀文獻的過程中發現一些純生信的文章會在一些高分雜誌中共享代碼,主要集中在Cell Reports,Nature Communications和Nature Medicine等雜誌;代碼類型包括,箱圖,熱圖,韋恩圖,散點圖,基因突變全景圖,小提琴圖,相關性熱圖等;
在這裡收集了10篇Nature Communications多組學文章代碼分享給大家,勤練之,必有進步。
1.Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs
DOI號:10.1038/s41467-019-10887-6代碼:https://github.com/yuchaojiang/damage_repair部分圖片展示
2.Association of imputed prostate cancer transcriptome with disease risk reveals novel mechanisms
DOI號:10.1038/s41467-019-10808-7代碼:www.github.com/Wittelab/PrCa_TWAS部分圖片展示
3.Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers
DOI號:10.1038/s41467-019-13161-x代碼:https://static-content.springer.com/esm/art%3A10.1038%2Fs41467-019-13161-x/MediaObjects/41467_2019_13161_MOESM6_ESM.zip部分圖片展示
4.Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types
DOI號:10.1038/s41467-019-11415-2代碼:https://github.com/katharineyu/TCGA_CCLE_paper部分圖片展示
5.Evaluating cell lines as models for metastatic breast cancer through integrative analysis of genomic data
DOI號:10.1038/s41467-019-10148-6代碼:https://github.com/Bin-Chen-Lab/MetaBreaCellLine部分圖片展示
6.Metabolic landscape of the tumor microenvironment at single cell resolution
DOI號:10.1038/s41467-019-11738-0代碼:https://github.com/LocasaleLab/Single-Cell-Metabolic-Landscape部分圖片展示
7.Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival
DOI號:10.1038/s41467-018-06921-8代碼:https://github.com/danro9685/CIMLR部分圖片展示
8.Pan-cancer deconvolution of tumour composition using DNA methylation
DOI號:10.1038/s41467-018-05570-1代碼:https://groups.google.com/d/forum/methyldeconvolution部分圖片展示
9.Proteogenomic landscape of squamous cell lung cancer
DOI號:10.1038/s41467-019-11452-x代碼:https://github.com/pstew/proteogenomics_scc部分圖片展示
10.Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer
DOI號:10.1038/s41467-019-08302-1代碼:https://github.com/clark-lab/Replication-Timing部分圖片展示
本文來自珠江腫瘤,排版:Robin
讓天下沒有難做的科研--聯繫我們:freescience@zju.edu.cn